PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0003s0049.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 210aa    MW: 22508 Da    PI: 5.7525
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0003s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-194897255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr++  +g+WvAeIr+p   + r +r +lg+f+ta eAa a++aa+ kl+g
  Kaladp0003s0049.1.p 48 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTAREAALAYDAAAVKLYG 97
                         69****999.**********8...3.35***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.67E-2147107No hitNo description
PROSITE profilePS5103222.70848105IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2248107IPR016177DNA-binding domain
PfamPF008471.1E-134897IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-3148107IPR001471AP2/ERF domain
SMARTSM003809.0E-3548111IPR001471AP2/ERF domain
PRINTSPR003673.1E-104960IPR001471AP2/ERF domain
PRINTSPR003673.1E-107187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSSSYSSSSS SSSSEKLARG SPGRKPGQGT SRKGCMRGKG GPENAACTYK GVRQRTWGKW  60
VAEIREPNRG ARLWLGTFDT AREAALAYDA AAVKLYGSDA KLNLPDSVPT PAANHHSPAP  120
THNVSYNYGF ATVNNDAVSD AEKQRWAEFD FDMNVAPGAT KAEDIVDEEL WAEAAKTLEF  180
PIMEGPGIFG NQCVDNNGLE VVMLSPWCI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-1949108666ATERF1
3gcc_A7e-1949108666ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1081433e-39AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence.
GenBankAP0046233e-39AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBankAP0054113e-39AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16.
GenBankAP0149643e-39AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3393753e-39AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds.
GenBankCP0126163e-39CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448193.16e-58PREDICTED: dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ26e-50DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A0D2TSK56e-58A0A0D2TSK5_G
STRINGPOPTR_0002s03090.16e-48(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.15e-42ERF family protein